org.compbio.bioverse.viewer
Class ViewerApplet

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Panel
              java.applet.Applet
                  javax.swing.JApplet
                      org.compbio.bioverse.viewer.ViewerApplet

All Implemented Interfaces:

javax.accessibility.Accessible, java.awt.event.ActionListener, java.util.EventListener, java.awt.image.ImageObserver, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.MenuContainer, java.awt.event.MouseListener, javax.swing.RootPaneContainer, java.io.Serializable

public class ViewerApplet

extends javax.swing.JApplet

implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.MouseListener, java.awt.event.KeyListener

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class javax.swing.JApplet

javax.swing.JApplet.AccessibleJApplet

Nested classes inherited from class java.applet.Applet

java.applet.Applet.AccessibleApplet

Nested classes inherited from class java.awt.Panel

java.awt.Panel.AccessibleAWTPanel

Nested classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

java.awt.Checkbox	hide_relax
static ViewerApplet	selfRef

Fields inherited from class javax.swing.JApplet

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

ViewerApplet()
CONSTRUCTOR

ViewerApplet(java.util.ArrayList intList)
overload contructor to allow data to be PUSHED into the viewer from Action class

Method Summary

void	actionPerformed(java.awt.event.ActionEvent e) ActionListener implementation method
void	addSortedGoCatsToMenu() add sorted GO cats to menu bar
void	clearScreen() clear screen method
void	destroy() destroy panel
void	getFunctionKeysFromHtml() data read in at init()
void	getFunctionListFromHtml() data read in at init()
void	getInteractionsFromHtml() for init() data read in
void	init() init() method
void	itemStateChanged(java.awt.event.ItemEvent e) itemListener implementation
void	keyPressed(java.awt.event.KeyEvent e) KeyListener implementation - for search field
void	keyReleased(java.awt.event.KeyEvent e) keyListener implement
void	keyTyped(java.awt.event.KeyEvent e) keyListener
void	mouseClicked(java.awt.event.MouseEvent e) handle right button mouse events separates for getting more detail on the protein node
void	mouseEntered(java.awt.event.MouseEvent e)
void	mouseExited(java.awt.event.MouseEvent e)
void	mousePressed(java.awt.event.MouseEvent e)
void	mouseReleased(java.awt.event.MouseEvent e)
int	popPartitionIt(int left, int right, int pivot) for quicksorting
void	popQuickSort(int left, int right) for quicksorting
void	setTableSelectedNodes(java.util.ArrayList tableSelect) for external calling from tableapplet - turn on table selected members on viewer
void	showSelectedNodes(java.lang.String gechoiced) MENU FUNCTIONALITY - get members of a given GO class
void	start() applet
void	stop() applet
void	swap(int dex1, int dex2) for quicksorting

Methods inherited from class javax.swing.JApplet

addImpl, createRootPane, getAccessibleContext, getContentPane, getGlassPane, getJMenuBar, getLayeredPane, getRootPane, isRootPaneCheckingEnabled, paramString, remove, setContentPane, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, update

Methods inherited from class java.applet.Applet

getAppletContext, getAppletInfo, getAudioClip, getAudioClip, getCodeBase, getDocumentBase, getImage, getImage, getLocale, getParameter, getParameterInfo, isActive, newAudioClip, play, play, resize, resize, setStub, showStatus

Methods inherited from class java.awt.Panel

addNotify

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, processEvent, remove, removeAll, removeContainerListener, removeNotify, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isOpaque, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

selfRef

public static ViewerApplet selfRef

hide_relax

public java.awt.Checkbox hide_relax

Constructor Detail

ViewerApplet

public ViewerApplet()

CONSTRUCTOR

ViewerApplet

public ViewerApplet(java.util.ArrayList intList)

overload contructor to allow data to be PUSHED into the viewer from Action class

Parameters:

intList -

Method Detail

init

public void init()

init() method

getInteractionsFromHtml

public void getInteractionsFromHtml()

for init() data read in

getFunctionKeysFromHtml

public void getFunctionKeysFromHtml()

data read in at init()

getFunctionListFromHtml

public void getFunctionListFromHtml()

data read in at init()

addSortedGoCatsToMenu

public void addSortedGoCatsToMenu()

add sorted GO cats to menu bar

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

ActionListener implementation method

Specified by:

actionPerformed in interface java.awt.event.ActionListener

clearScreen

public void clearScreen()

clear screen method

destroy

public void destroy()

destroy panel

itemStateChanged

public void itemStateChanged(java.awt.event.ItemEvent e)

itemListener implementation

Specified by:

itemStateChanged in interface java.awt.event.ItemListener

keyPressed

public void keyPressed(java.awt.event.KeyEvent e)

KeyListener implementation - for search field

Specified by:

keyPressed in interface java.awt.event.KeyListener

keyReleased

public void keyReleased(java.awt.event.KeyEvent e)

keyListener implement

Specified by:

keyReleased in interface java.awt.event.KeyListener

keyTyped

public void keyTyped(java.awt.event.KeyEvent e)

keyListener

Specified by:

keyTyped in interface java.awt.event.KeyListener

mouseClicked

public void mouseClicked(java.awt.event.MouseEvent e)

handle right button mouse events separates for getting more detail on the protein node

Specified by:

mouseClicked in interface java.awt.event.MouseListener

mouseEntered

public void mouseEntered(java.awt.event.MouseEvent e)

Specified by:

mouseEntered in interface java.awt.event.MouseListener

mouseExited

public void mouseExited(java.awt.event.MouseEvent e)

Specified by:

mouseExited in interface java.awt.event.MouseListener

mousePressed

public void mousePressed(java.awt.event.MouseEvent e)

Specified by:

mousePressed in interface java.awt.event.MouseListener

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent e)

Specified by:

mouseReleased in interface java.awt.event.MouseListener

popPartitionIt

public int popPartitionIt(int left,
                          int right,
                          int pivot)

for quicksorting

Parameters:

left -

right -

pivot -

Returns:

popQuickSort

public void popQuickSort(int left,
                         int right)

for quicksorting

Parameters:

left -

right -

swap

public void swap(int dex1,
                 int dex2)

for quicksorting

Parameters:

dex1 -

dex2 -

setTableSelectedNodes

public void setTableSelectedNodes(java.util.ArrayList tableSelect)

for external calling from tableapplet - turn on table selected members on viewer

Parameters:

tableSelect -

showSelectedNodes

public void showSelectedNodes(java.lang.String gechoiced)

MENU FUNCTIONALITY - get members of a given GO class

Parameters:

gechoiced -

start

public void start()

applet

stop

public void stop()

applet